These sites have a link to mine, it could be that they are of interest to you as well:
http://biolinks.net.ru/Software/
http://www.bioinformatik.de/cgi-
bin/browse/Catalog/Software/Windows/
http://www.dmoz.org/Science/Biology/Biochemistry_and_Molecular_Biology/Gene_Expression/Software/
This is the "human index" site so there are a lot of copies from this site!!
http://rebase.neb.com/rebase/rebrel.html
http://molbiol-tools.ca/molecular_biology_freeware.htm
If you know of a site that should be on this page; let me know! EMail
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